Persimmon (Diospyros kaki l.) and johnsongrass [sorghum halepense (l.) pers.] are new natural hosts of peach latent mosaic viroid

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dc.authorid0000-0002-4503-6344en_US
dc.authorscopusid57206185072en_US
dc.authorwosidAAC-3194-2022en_US
dc.contributor.authorOksal, H. D.
dc.contributor.authorAydın, S.
dc.contributor.authorBaran, M.
dc.contributor.authorEmir, C.
dc.contributor.authorKaranfil, A.
dc.contributor.authorBozdoğan, O.
dc.contributor.authorSipahioğlu, H. M.
dc.date.accessioned2023-08-01T05:51:21Z
dc.date.available2023-08-01T05:51:21Z
dc.date.issued2021en_US
dc.departmentFakülteler, Ziraat Fakültesi, Bitki Koruma Bölümü
dc.description.abstractPeach latent mosaic viroid (PLMVd) naturally infects stone fruits worldwide. Here, we report the first detection of PLMVd in persimmon (Diospyros kaki L.) and a weed Johnsongrass [Sorghum halepense (L.) Pers.]. Samples corresponding to 12 persimmon specimens and weeds nearby the persimmon trees were collected from a germplasm collection plot in Malatya (Turkey). Total RNAs were isolated using a silica-based method and the complete viroid genome was amplified by reverse transcriptase polymerase chain reaction (RT-PCR). From these samples, PLMVd was detected in 7 of the 12 persimmons and in Johnsongrass revealing 8 new sequence variants. Multiple alignment and phylogenetic analyses revealed that identified persimmon and Johnsongrass isolates clustered only with PLMVd-walnut isolates previously identified from same locality. The nucleotide sequences of PLMVd persimmon and Johnsongrass isolates showed 96.71-99.11% similarity with the PLMVd isolates detected in different fruit crops in the world. A single specific mutation identified in two PLMVd persimmon variants (-TH2 and-TH10) effectively changed the predicted secondary structure of the agent. The identification and the genetic analyses of PLMVd variants in persimmon and Johnsongrass confirm that the agent is a ubiquitous and genetically variable viroid that infects many cultivated fruit crops and weeds worldwide.en_US
dc.identifier.citationOksal, H. D., Aydın, S., Baran, M., Emir, C., Karanfil, A., Bozdoğan, O. & Sipahioğlu, H. M. (2021). Persimmon (Diospyros kaki l.) and johnsongrass [sorghum halepense (l.) pers.] are new natural hosts of peach latent mosaic viroid. Applied Ecology and Environmental Research, 19(6), 4629-4639. doi: 10.15666/aeer/1906_46294639en_US
dc.identifier.doi10.15666/aeer/1906_46294639
dc.identifier.endpage4639en_US
dc.identifier.issn1589-1623
dc.identifier.issn1785-0037
dc.identifier.issue6en_US
dc.identifier.scopus2-s2.0-85120554531
dc.identifier.startpage4629en_US
dc.identifier.urihttps://doi.org/10.15666/aeer/1906_46294639
dc.identifier.urihttps://hdl.handle.net/20.500.12428/4453
dc.identifier.volume19en_US
dc.identifier.wosWOS:000725485200028
dc.identifier.wosqualityQ4
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorKaranfil, Ali
dc.language.isoen
dc.publisherCorvinus University of Budapesten_US
dc.relation.ispartofApplied Ecology and Environmental Researchen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectIdentificationen_US
dc.subjectPersimmonen_US
dc.subjectPLMVden_US
dc.subjectRT-PCRen_US
dc.subjectTurkeyen_US
dc.subjectWeeden_US
dc.titlePersimmon (Diospyros kaki l.) and johnsongrass [sorghum halepense (l.) pers.] are new natural hosts of peach latent mosaic viroid
dc.typeArticle

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