The Timescale of Emergence and Spread of Turnip Mosaic Potyvirus

Basit Öğe Kaydı
dc.authoridYasaka, Ryosuke/0000-0002-2240-1767
dc.contributor.authorYasaka, Ryosuke
dc.contributor.authorFukagawa, Hirofumi
dc.contributor.authorIkematsu, Mutsumi
dc.contributor.authorSoda, Hiroko
dc.contributor.authorKorkmaz, Savaş
dc.contributor.authorGolnaraghi, Alireza
dc.contributor.authorKatis, Nikolaos
dc.date.accessioned2025-01-27T20:31:55Z
dc.date.available2025-01-27T20:31:55Z
dc.date.issued2017
dc.departmentÇanakkale Onsekiz Mart Üniversitesi
dc.description.abstractPlant viruses have important global impacts on crops, and identifying their centre and date of emergence is important for planning control measures. Turnip mosaic virus (TuMV) is a member of the genus Potyvirus in the family Potyviridae and is a major worldwide pathogen of brassica crops. For two decades, we have collected TuMV isolates, mostly from brassicas, in Turkey and neighbouring countries. This region is thought to be the centre of emergence of this virus. We determined the genomic sequences of 179 of these isolates and used these to estimate the timescale of the spread of this virus. Our Bayesian coalescent analyses used synonymous sites from a total of 417 novel and published whole-genome sequences. We conclude that TuMV probably originated from a virus of wild orchids in Germany and, while adapting to wild and domestic brassicas, spread via Southern Europe to Asia Minor no more than 700 years ago. The population of basal-B group TuMVs in Asia Minor is older than all other populations of this virus, including a newly discovered population in Iran. The timescale of the spread of TuMV correlates well with the establishment of agriculture in these countries.
dc.description.sponsorshipSaga University; JSPS KAKENHI [18405022, 24405026, 16K14862]; [16J04390]; Grants-in-Aid for Scientific Research [16J04390, 18405022, 24405026, 16K14862] Funding Source: KAKEN
dc.description.sponsorshipWe thank Yasuhiro Tomitaka, Sadayuki Akaishi, Ayako Mori, Kozue Yamaguchi, Mai Nishiyama, Mariko Yamaguchi, Kenta Soejima (Laboratory of Plant Virology, Saga University), Yukio Nagano (Analytical Research Center for Experimental Sciences, Saga University) and John Walsh (University of Warwick, UK) for their careful technical assistance and sample collection. This work was in part funded by Saga University and supported by JSPS KAKENHI Grant numbers 18405022, 24405026 and 16K14862 and Grant-in-Aid for JSPS Research Fellow Grant number 16J04390.
dc.identifier.doi10.1038/s41598-017-01934-7
dc.identifier.issn2045-2322
dc.identifier.pmid28652582
dc.identifier.scopus2-s2.0-85021651508
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.1038/s41598-017-01934-7
dc.identifier.urihttps://hdl.handle.net/20.500.12428/23307
dc.identifier.volume7
dc.identifier.wosWOS:000404037400007
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherNature Portfolio
dc.relation.ispartofScientific Reports
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_WoS_20250125
dc.subjectGenetic-Structure
dc.subjectMolecular Characterization
dc.subjectEvolutionary Dynamics
dc.subjectVirus Population
dc.subjectRecombination
dc.subjectDna
dc.subjectSequences
dc.subjectRates
dc.titleThe Timescale of Emergence and Spread of Turnip Mosaic Potyvirus
dc.typeArticle

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayınlar Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu