First Insight into Genetic Variation and Population Structure of The Emerging Citrus chlorotic dwarf-associated virus (CCDaV, genus Citlodavirus)

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dc.contributor.authorRanda Zelyüt, Filiz
dc.contributor.authorSantosa, Adyatma Irawan
dc.contributor.authorKaranfil, Ali
dc.contributor.authorSilva, Jose Cleydson Ferreira
dc.date.accessioned2025-01-27T18:59:09Z
dc.date.available2025-01-27T18:59:09Z
dc.date.issued2022
dc.departmentÇanakkale Onsekiz Mart Üniversitesi
dc.description.abstractCitrus spp. is widely planted in tropical and subtropical regions, including in Turkey and other Mediterranean countries. Due to its widespread vector and climate change, Citrus chlorotic dwarf-associated virus (CCDaV), a member of the newly formed genus Citlodavirus, is one of the emerging viruses that can be a serious constraint to Citrus crops production in the coming years. Therefore, in-silico analysis on all available isolates in NCBI GenBank was performed to provide the first insight into the genetic population and evolution of CCDaV, which may contribute to its control. CCDaV phylogroups based on full genome, complete movement protein, and complete coat protein sequences were found to be not associated with isolate origins or host species, and all isolates also shared a high genetic identity among them. However, neutrality tests indicated that the current populations are expanding, driven by new mutations. Low Fixation index (FST) values (0.00000-0.36207) confirmed no genetic separation among different ORFs of isolates from three countries. The constructed TimeTree suggested that CCDaV emergence was very recent compared to the other three members of the genus Citlodavirus. Therefore, the obtained results of this study could also expand our knowledge on other even more obscure citladovirus and even other plant DNA viruses, which are still less studied than RNA viruses. © 2022, Centenary University. All rights reserved.
dc.identifier.doi10.29133/yyutbd.1123999
dc.identifier.endpage601
dc.identifier.issn1308-7576
dc.identifier.issue3
dc.identifier.scopus2-s2.0-85138304799
dc.identifier.scopusqualityQ3
dc.identifier.startpage591
dc.identifier.trdizinid1128565
dc.identifier.urihttps://doi.org/10.29133/yyutbd.1123999
dc.identifier.urihttps://search.trdizin.gov.tr/tr/yayin/detay/1128565
dc.identifier.urihttps://hdl.handle.net/20.500.12428/13169
dc.identifier.volume32
dc.indekslendigikaynakScopus
dc.indekslendigikaynakTR-Dizin
dc.language.isoen
dc.publisherCentenary University
dc.relation.ispartofYuzuncu Yil University Journal of Agricultural Sciences
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_Scopus_20250125
dc.subjectDivergence time; Phylogenetic analysis; Plant DNA virus evolution; Population structure
dc.titleFirst Insight into Genetic Variation and Population Structure of The Emerging Citrus chlorotic dwarf-associated virus (CCDaV, genus Citlodavirus)
dc.typeArticle

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